Research Catalog

Title

Next-generation DNA sequencing informatics / edited by Stuart M. Brown.

Publication

Cold Spring Harbor, New York : Cold Spring Harbor Laboratory Press, [2015]

Items in the Library & Off-site

Holdings

Details

Additional Authors

Brown, Stuart M., 1962-

Subject

• Nucleotide sequence
• Bioinformatics

Bibliography (note)

• Includes bibliographical references and index.

Contents

1. Introduction to DNA Sequencing / Stuart M. Brown -- 2. Quality Control and Data Preprocessing / Stuart M. Brown -- 3. History of Sequencing Informatics / Stuart M. Brown -- 4. Public Sequence Databases -- Stuart M. Brown -- 5. Visualization of Next-Generation Sequencing Data / Philip Ross Smith, Kranti Konganti, and Stuart M. Brown -- 6. DNA Sequence Alignment / Efstratios Efstathiadis -- 7. Genome Assembly Using Generalized de Bruijin Digraphs / D. Frank Hsu -- 8. De novo Assembly of Bacterial Genomes from Short Sequence Reads / Silvia Argimón and Stuart M. Brown / 9. De novo Transcriptome Assembly / Lisa Cohen, Steven Shen, and Efstratios Efstathiadis -- 10. Genome Annotation / Steven Shen and Stuart M. Brown -- 11. Using Next-Generation Sequencing to Detect Sequence Variants / Jinhua Wang, Zuojian Tang, and Stuart M. Brown -- 12. ChIP-seq -- Stuart M. Brown, Zuojian Tang, Christina Schweikert, and D. Frank Hsu -- 13. RNA Sequencing with Next-Generation Sequencing / Stuart M. Brown and Jeremy Goecks -- 14. Metagenomics / Guillermo I. Perez-Perez, Miroslav Blumenberg, and Alexander V. Alekseyenko -- 15. Proteogenomics / Kelly V. Ruggles and David Fenyö -- 16. Emerging DNA Sequencing Technologies and Applications / Gerald A. Higgins and Brian D. Athey -- 17. Cloud-based Next-Generation Sequencing Informatics / Konstantinos Krampis, Efstratios Efstathiadis, and Stuart M. Brown -- Glossary -- Index.

ISBN

• 9781621821236
• 1621821234

LCCN

• 2015012098
• 99967303719

OCLC

• ocn907948373
• 907948373
• SCSB-5848081

Owning Institutions

Columbia University Libraries